Arce AL, Mencia R, Cambiagno DA, Lang PL, Liu C, Burbano HA, Weigel D, Manavella PA. Polymorphic inverted repeats near coding genes impact chromatin topology and phenotypic traits in Arabidopsis thaliana. Cell Rep. 2023 Jan 22;42(1):112029. doi: 10.1016/j.celrep.2023.112029. PUBMED

Eckardt NA, Axtell MJ, Barta A, Chen X, Gregory BD, Guo H, Manavella PA, Mosher RA, Meyers BC. Focus on RNA biology. Plant Cell. 2023 Mar 21:koad082. doi: 10.1093/plcell/koad082. PUBMED


Di Persia L, López T, Arce AL, Milone DH, Stegmayer G. exp2GO: improving prediction of functions in the Gene Ontology with expression data. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10.1109/TCBB.2022.3167245 PMID

Fan L, Gao B, Xu Y, Flynn N, Le B, You C, Li S, Achkar N, Manavella PA, Yang Z, Chen X. Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis. PNAS 2022 accepted

Mencia R, Gonzalo L, Tossolini I, Manavella PA (2022) Keeping up with the miRNAs: current paradigms of the biogenesis pathway. Journal of Experimental Botany, erac322, https://doi.org/10.1093/jxb/erac322 PMIDhttps://pubmed.ncbi.nlm.nih.gov/35959860/

You Y, Koczyk F, Nuc M, Morbitzer R, Holmes D, Hou S, Giudicatti AJ, Gris C, Manavella PA, Noël L, Krajewski P, Lahaye T. Novel eINTACT system dissects bacterial exploitation of plant osmosignalling to enhance virulence. Nature Plants 2022 accepted

Gonzalo L, Tossolini I, Gulanicz T, Cambiagno DA, Kasprowicz-Maluski A, Smolinski DJ, Mammarella MF, Ariel FD, Marquardt S, Szweykowska-Kulinska Z, Jarmolowski A, Manavella PA. (2022) R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants. Nature Plants. 2022 Apr;8(4):402-418. doi: 10.1038/s41477-022-01125-x PUBMED

Mencia R., Welchen E., Auer S., Ludwig-Müller J. A Novel Target (Oxidation Resistant 2) in Arabidopsis thaliana to Reduce Clubroot Disease Symptoms via the Salicylic Acid Pathway without Growth Penalties (2022) Horticulturae, 8 (1), art. no. 9, DOI: 10.3390/horticulturae8010009


González FG, Manavella PA. Prospects for plant productivity: from the canopy to the nucleus.  Journal of Experimental Botany. 2021 May 18;72(11):3931-3935. doi: 10.1093/jxb/erab147. PMID

Ariel FD, Manavella PA. When junk DNA turns functional: transposon-derived non-coding RNAs in plants.  Journal of Experimental Botany. 2021 May 18;72(11):4132-4143. doi: 10.1093/jxb/erab073.PMID

Cambiagno DA, Giudicatti AJ, Arce AL, Gagliardi D, Li L, Yuan W, Lundberg DS, Weigel D, Manavella PA. HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing. Molecular Plant. 2021 Mar 1;14(3):426-439. doi: 10.1016/j.molp.2020.12.019. Epub 2020 Dec 30.PMID

Giudicatti AJ, Tomassi H, Manavella PA, Arce AL. Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA. Turnover Plants 2021, 10(2), 267; doi.org/10.3390/plants10020267 - 30 Jan 2021


Tomassi AH, Ré DA, Romani F, Cambiagno DA, Gonzalo L, Moreno JE, Arce AL, Manavella PA. The intrinsically disordered protein CARP9 bridges HYL1 to AGO1 in the Nucleus to Promote micro RNA activity. Plant Physiology. Sep;184(1):316-329. doi: 10.1104/pp.20.00258. Epub 2020 Jul 7. PubMed

Cambiagno DA, Giudicatti AJ, Arce AL, Gagliardi D, Li L, Yuan W, Lundberg DS, Weigel D, Manavella PA. HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing. Molecular Plant. 2020 Dec 30:S1674-2052(20)30450-0. doi: 10.1016/j.molp.2020.12.019.

Choi SW, Ryu MY, Viczián A, Jung HJ, Kim GM, Arce AL, Achkar NP, Manavella P, Dolde U, Wenkel S, Molnár A, Nagy F, Cho SK, Yang SW. Light Triggers the miRNA- Biogenetic Inconsistency for De-etiolated Seedling Survivability in Arabidopsis thaliana. Molecular Plant. 2020 Mar 2;13(3):431-445. doi: 10.1016/j.molp.2019.10.011. Epub 2019 Oct 31. PubMed

Gagliardi D, Manavella PA. Short-Range Regulatory Chromatin Loops in Plants. New Phytologist. 2020 Apr 30; doi:10.1111/nph.16632. PubMed

Miguel VN, Manavella PA, Chan RL, Capella MA. The AtHB1 Transcription Factor Controls the miR164-CUC2 Regulatory Node to Modulate Leaf Development. Plant Cell Physiology. 2020 Mar 1;61(3):659-670. doi: 10.1093/pcp/pcz233. PubMed

Ré DA, Cambiagno DA, Arce AL, Tomassi AH, Giustozzi M, Casati P, Ariel FD, Manavella PA. CURLY LEAF Regulates MicroRNA Activity by Controlling ARGONAUTE 1 Degradation in Plants. Molecular Plant. 2020 Jan 6;13(1):72-87. doi: 10.1016/j.molp.2019.10.003. Epub 2019 Oct 10. PubMed 

Ribichich KF, Chiozza M, Ávalos-Britez S, Cabello JV, Arce AL, Watson G, Arias C, Portapila M, Trucco F, Otegui ME, Chan RL. Successful field performance in dry-warm environments of soybean expressing the sunflower transcription factor HaHB4. Journal of Experimental Botany. 2020 Mar 6. pii: eraa064. doi: 10.1093/jxb/eraa064. [Epub ahead of print] PubMed


Gagliardi D, Cambiagno DA, Arce AL, Tomassi AH, Giacomelli JI, Ariel FD, Manavella PA. Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower. Plant Biology. 2019 Aug 27;116(35):17578-17583. doi: 10.1073/pnas.1903131116. Epub 2019 Aug 13. PubMed; PMC

Manavella PA, Yang SW, Palatnik J. Keep calm and carry on: miRNA biogénesis under stress. Plant Journal. 2019 Sep;99(5):832-843. doi: 10.1111/tpj.14369. Epub 2019 May 23. PubMed

Ré DA, Lang PLM, Yones C, Arce AL, Stegmayer G, Milone D, Manavella PA. Alternative use of miRNA-biogenesis co-factors in plants at low temperatures. Development. 2019 Mar 1;146(5):dev172932. doi: 10.1242/dev.172932. PubMed


Achkar NP, Cho SK, Poulsen C, Arce AL, Re DA, Giudicatti AJ, Karayekov E, Ryu MY, Choi SW, Harholt J, Casal JJ, Yang SW, Manavella PA. A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation. Developmental Cell. 2018 Jul 16;46(2):236-247.e6. doi: 10.1016/j.devcel.2018.06.014. PubMed 


Lucero LE, Manavella PA, Gras DE, Ariel FD, Gonzalez DH. Class I and Class II TCP Transcription Factors Modulate SOC1-Dependent Flowering at Multiple Levels. Molecular Plant. 2017 Dec 4;10(12):1571-1574. doi: 10.1016/j.molp.2017.09.001. Epub 2017 Sep 8. PubMed

Tomassi AH, Gagliardi D, Cambiagno DA, Manavella PA. Nonradioactive Detection of Small RNAs Using Digoxigenin-Labeled Probes. Plant Argonaute Proteins. 2017;1640:199-210. doi: 10.1007/978-1-4939-7165-7_14. PubMed


Achkar NP, Cambiagno DA, Manavella PA. miRNA Biogenesis: A Dynamic Pathway. Trends Plant Science. 2016 Dec;21(12):1034-1044. doi: 10.1016/j.tplants.2016.09.003. Epub 2016 Oct 25. PubMed


Karlsson P, Christie MD, Seymour DK, Wang H, Wang X, Hagmann J, Kulcheski F, Manavella PA. KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1. Plant Biology. 2015 Nov 10;112(45):14096-101. doi: 10.1073/pnas.1512865112. Epub 2015 Oct 28. PubMed; PMC

Ré DA, Manavella PA. Caught in a TrAP. Elife. 2015 Oct 16;4:e11509. doi: 10.7554/eLife.11509. PubMed; PMC

Francisco-Mangilet AG, Karlsson P, Kim MH, Eo HJ, Oh SA, Kim JH, Kulcheski FR, Park SK, Manavella PA. THO2, a core member of the THO/TREX complex, is required for microRNA production in Arabidopsis. Plant Journal. 2015 Jun;82(6):1018-1029. doi: 10.1111/tpj.12874. PubMed

Forner J, Pfeiffer A, Langenecker T, Manavella PA, Lohmann JU. Germline- transmitted genome editing in Arabidopsis thaliana Using TAL-effector-nucleases. PLoS One. 2015 Mar 30;10(3):e0121056. doi: 10.1371/journal.pone.0121056. Erratum in: PLoS One. 2015;10(7):e0133945. Manavella, Pablo [corrected to Manavella, Pablo A]. PubMed; PMC